SNP Profiles matching AMAZ 3/2

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	1	2	3	4	5	6	7	8	9	10	11	12	13	14
_Input profile	CC	AA	CC	TT	TT	AA	TT	TT	CT	CC	AA	GG	CC	AA
1._AMAZ_3_/2	CC	AA	CC	TT	TT	AA	TT	TT	CT	CC	AA	GG	CC	AA
2._AMAZ_3_/2	CC	AA	CC	TT	TT	AA	TT	TT	CT	CC	AA	GG	CC	AA
3._AMAZ_3_/2	CC	AA	CC	TT	TT	AA	TT	TT	CT	CC	AA	GG	CC	AA
4._AMAZ_3_/2	CC	AA	CC	TT	TT	AA	TT	TT	CT	CC	AA	GG	CC	AA
5._AMAZ_3_/2	CC	AA	CC	TT	TT	AA	TT	TT	CT	CC	AA	GG	CC	AA
6._GC-03-022-2-11	CC	AA	CC	TT	TT	AA	TT	TT	CT	CC	AA	GG	CC	AA
7._GC-03-022-2-11	CC	AA	CC	TT	TT	AA	TT	TT	CT	CC	AA	GG	CC	AA
8._GC-03-022-2-11	CC	AA	CC	TT	TT	AA	TT	TT	CT	CC	AA	GG	CC	AA
9._GC-03-022-2-11	CC	AA	CC	TT	TT	AA	TT	TT	CT	CC	AA	GG	CC	AA
10._GC-03-022-2-11	CC	AA	CC	TT	TT	AA	TT	TT	CT	CC	AA	GG	CC	AA
11._GC-03-022-2-11	CC	AA	CC	TT	TT	AA	TT	TT	CT	CC	AA	GG	CC	AA
12._AMAZ_3_/2	CC	AA	CC	TT	TT	AA	TT	TT	CT	CC	AA	GG	CC	AA
13._AMAZ_3_/2	CC	_	CC	TT	TT	AA	TT	TT	CT	CC	AA	GG	CC	AA
14._AMAZ_3_/2	CC	AA	CC	TT	_	AA	TT	TT	CT	CC	AA	GG	CC	AA
15._AMAZ_3_/2	CC	AA	CC	TT	TT	_	TT	TT	CT	CC	AA	GG	CC	AA
16._AMAZ_3_/2	CC	AA	CC	TT	TT	AA	TT	TT	CT	CC	AA	GG	CC	AA
17._GC-03-022-2-11	CC	AA	CC	TT	TT	AA	TT	TT	CT	CC	AA	GG	CC	AA
18._GC-03-022-2-11	CC	AA	CC	TT	TT	_	TT	TT	CT	CC	AA	GG	CC	AA
19._GC-03-022-2-11	CC	AA	CC	TT	_	AA	TT	TT	CT	CC	AA	GG	CC	AA
20._GC-03-022-2-11	CC	_	CC	TT	TT	AA	TT	TT	CT	CC	AA	GG	CC	AA
21._RUQ_91	CC	AG	CC	TT	TT	AA	TT	TT	CT	CC	AA	GG	CT	AA

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	CT	AT	GG	CT	CC	CG	GT	AA	CC	AA	GG	CC	CC	AA
1._AMAZ_3_/2	CT	AT	GG	CT	CC	CG	GT	AA	CC	AA	GG	CC	CC	AA
2._AMAZ_3_/2	CT	AT	GG	CT	CC	CG	GT	AA	CC	AA	GG	CC	CC	AA
3._AMAZ_3_/2	CT	AT	GG	CT	CC	CG	GT	AA	CC	AA	GG	CC	CC	AA
4._AMAZ_3_/2	CT	AT	GG	CT	CC	CG	GT	AA	CC	AA	GG	CC	CC	AA
5._AMAZ_3_/2	CT	AT	GG	CT	CC	CG	GT	AA	CC	AA	GG	CC	CC	AA
6._GC-03-022-2-11	CT	AT	GG	CT	CC	CG	GT	AA	CC	AA	GG	CC	CC	AA
7._GC-03-022-2-11	CT	AT	GG	CT	CC	CG	GT	AA	CC	AA	GG	CC	CC	AA
8._GC-03-022-2-11	CT	AT	GG	CT	CC	CG	GT	AA	CC	AA	GG	CC	CC	AA
9._GC-03-022-2-11	CT	AT	GG	CT	CC	CG	GT	AA	CC	AA	GG	CC	CC	AA
10._GC-03-022-2-11	CT	AT	GG	CT	CC	CG	GT	AA	CC	AA	GG	CC	CC	AA
11._GC-03-022-2-11	CT	AT	GG	CT	CC	CG	GT	AA	CC	AA	GG	CC	CC	AA
12._AMAZ_3_/2	CT	AT	GG	CT	CC	CG	GT	AA	CC	AA	GG	CC	CC	AA
13._AMAZ_3_/2	CT	AT	GG	CT	CC	CG	GT	AA	CC	AA	GG	CC	CC	AA
14._AMAZ_3_/2	CT	AT	GG	CT	CC	CG	GT	AA	CC	AA	GG	CC	CC	AA
15._AMAZ_3_/2	CT	AT	GG	CT	CC	CG	GT	AA	CC	AA	GG	CC	CC	AA
16._AMAZ_3_/2	CT	AT	GG	CT	CC	CG	GT	AA	CC	AA	GG	CC	CC	AA
17._GC-03-022-2-11	CT	AT	GG	CT	CC	CG	GT	AA	CC	AA	GG	CC	CC	AA
18._GC-03-022-2-11	CT	AT	GG	CT	CC	CG	GT	AA	CC	AA	GG	CC	CC	AA
19._GC-03-022-2-11	CT	AT	GG	CT	CC	CG	GT	AA	CC	AA	GG	CC	CC	AA
20._GC-03-022-2-11	CT	AT	GG	CT	CC	CG	GT	AA	CC	AA	GG	CC	CC	AA
21._RUQ_91	CT	AT	GG	CT	CC	CG	GT	AA	CC	AA	GG	CC	CC	AA

	29	30	31	32	33	34	35	36	37	38	39
_Input profile	GG	AT	TT	AA	GG	AA	CC	GT	AA	AT	GG	X_X	X_X	X_X
1._AMAZ_3_/2	GG	AT	TT	AA	GG	AA	CC	GT	AA	AT	GG	X_X	X_X	X_X
2._AMAZ_3_/2	GG	AT	TT	AA	GG	AA	CC	GT	AA	AT	GG	X_X	X_X	X_X
3._AMAZ_3_/2	GG	AT	TT	AA	GG	AA	CC	GT	AA	AT	GG	X_X	X_X	X_X
4._AMAZ_3_/2	GG	AT	TT	AA	GG	AA	CC	GT	AA	AT	GG	X_X	X_X	X_X
5._AMAZ_3_/2	GG	AT	TT	AA	GG	AA	CC	GT	AA	AT	GG	X_X	X_X	X_X
6._GC-03-022-2-11	GG	AT	TT	AA	GG	AA	CC	GT	AA	AT	GG	X_X	X_X	X_X
7._GC-03-022-2-11	GG	AT	TT	AA	GG	AA	CC	GT	AA	AT	GG	X_X	X_X	X_X
8._GC-03-022-2-11	GG	AT	TT	AA	GG	AA	CC	GT	AA	AT	GG	X_X	X_X	X_X
9._GC-03-022-2-11	GG	AT	TT	AA	GG	AA	CC	GT	AA	AT	GG	X_X	X_X	X_X
10._GC-03-022-2-11	GG	AT	TT	AA	GG	AA	CC	GT	AA	AT	GG	X_X	X_X	X_X
11._GC-03-022-2-11	GG	AT	TT	AA	GG	AA	CC	GT	AA	AT	GG	X_X	X_X	X_X
12._AMAZ_3_/2	GG	AT	TT	AA	GG	AA	CC	GT	AA	AT	GG	X_X	X_X	X_X
13._AMAZ_3_/2	GG	AT	TT	AA	GG	AA	CC	GT	AA	AT	GG	X_X	X_X	X_X
14._AMAZ_3_/2	GG	AT	TT	AA	GG	AA	CC	GT	AA	AT	GG	X_X	X_X	X_X
15._AMAZ_3_/2	GG	AT	TT	AA	GG	AA	CC	GT	AA	AT	GG	X_X	X_X	X_X
16._AMAZ_3_/2	GG	AT	TT	AA	GG	AA	_	GT	AA	AT	GG	X_X	X_X	X_X
17._GC-03-022-2-11	GG	AT	TT	AA	GG	AA	_	GT	AA	AT	GG	X_X	X_X	X_X
18._GC-03-022-2-11	GG	AT	TT	AA	GG	AA	CC	GT	AA	AT	GG	X_X	X_X	X_X
19._GC-03-022-2-11	GG	AT	TT	AA	GG	AA	CC	GT	AA	AT	GG	X_X	X_X	X_X
20._GC-03-022-2-11	GG	AT	TT	AA	GG	AA	CC	GT	AA	AT	GG	X_X	X_X	X_X
21._RUQ_91	GG	AT	TT	AA	GG	AA	CC	GT	AA	AT	GG	X_X	X_X	X_X

Input profile: AMAZ_3_/2

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Mars Center for Cocoa Science, Brazil

Location: 3211 14 > F

Dapeng Zhang, 2016

1._AMAZ_3_/2

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 3211 5 > FP

Dapeng Zhang, 2016

2._AMAZ_3_/2

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 3211 1 > FP

Dapeng Zhang, 2016

3._AMAZ_3_/2

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 3211 15

Dapeng Zhang, 2016

4._AMAZ_3_/2

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 3211 13

Dapeng Zhang, 2016

5._AMAZ_3_/2

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 3211 12

Dapeng Zhang, 2016

6._AMAZ_3_/2 GC-03-022-2-11

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 1

Notes: 1 > FP4

7._AMAZ_3_/2 GC-03-022-2-11

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 5

Notes: 5 > FP4

8._AMAZ_3_/2 GC-03-022-2-11

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 12

Notes: 12

9._AMAZ_3_/2 GC-03-022-2-11

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 13

Notes: 13

10._AMAZ_3_/2 GC-03-022-2-11

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 14

Notes: 14 > FP2

11._AMAZ_3_/2 GC-03-022-2-11

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 15

Notes: 15

12._AMAZ_3_/2

identical
39 shared markers

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Cocoa Research Institute of Ghana (CRIG), Ghana

Location: P97 225

Dapeng Zhang, 2016

13._AMAZ_3_/2

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 3211 16

Dapeng Zhang, 2016

14._AMAZ_3_/2

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 3211 9

Dapeng Zhang, 2016

15._AMAZ_3_/2

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 3211 8

Dapeng Zhang, 2016

Population Assignment:

Dapeng Zhang, 2016

16._AMAZ_3_/2

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 3211 7

Dapeng Zhang, 2016

17._AMAZ_3_/2 GC-03-022-2-11

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 7

Notes: 7

18._AMAZ_3_/2 GC-03-022-2-11

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 8

Notes: 8

19._AMAZ_3_/2 GC-03-022-2-11

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 9

Notes: 9

20._AMAZ_3_/2 GC-03-022-2-11

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 16

Notes: 16

21._AMAZ_3_/2 RUQ_91

97.4 %
39 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2016

Key to SNP Markers

Key to SNP Markers

1	TcSNP1520	2	TcSNP1484	3	TcSNP1458	4	TcSNP1442	5	TcSNP1414
6	TcSNP1350	7	TcSNP1270	8	TcSNP1253	9	TcSNP1165	10	TcSNP1144
11	TcSNP1075	12	TcSNP1062	13	TcSNP1060	14	TcSNP998	15	TcSNP994
16	TcSNP953	17	TcSNP929	18	TcSNP917	19	TcSNP891	20	TcSNP872
21	TcSNP723	22	TcSNP645	23	TcSNP619	24	TcSNP591	25	TcSNP560
26	TcSNP534	27	TcSNP529	28	TcSNP469	29	TcSNP429	30	TcSNP372
31	TcSNP242	32	TcSNP230	33	TcSNP226	34	TcSNP193	35	TcSNP151
36	TcSNP150	37	TcSNP144	38	TcSNP32	39	TcSNP25